PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01870.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 236aa    MW: 25726.8 Da    PI: 6.503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01870.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-194292155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa+a++aa+++l+g
  Zpz_sc01870.1.g00070.1.am.mk 42 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALEAARAYDAAARALYG 92
                                  679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.1E-3143106IPR001471AP2/ERF domain
PROSITE profilePS5103220.82443100IPR001471AP2/ERF domain
PfamPF008475.6E-134492IPR001471AP2/ERF domain
PRINTSPR003671.3E-94455IPR001471AP2/ERF domain
CDDcd000188.65E-1744101No hitNo description
Gene3DG3DSA:3.30.730.109.9E-2944100IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2044100IPR016177DNA-binding domain
PRINTSPR003671.3E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDEGDFQFRH QSNQKRSRKC CPLRRSRKGC IKGKGGPENQ QCPFRGVRQR TWGKWVAEIR  60
EPNRGARLWL GTFATALEAA RAYDAAARAL YGDCARLNLA AETTPAHTVA AADVRSMTTP  120
CCSADDSANS SVISQVTAVL LPGRHCLMTQ QDAAAAGGTG AGINDSITRT RTAIQQQTDQ  180
LHQLEDDDEG EDFEQFVTRL PKAEDFGLEG FPPDVFDDDA GGIGWPAGMM RVVPRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-134499662ATERF1
2gcc_A3e-134499662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9520589e-83EU952058.1 Zea mays clone 1066007 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.12e-71PREDICTED: dehydration-responsive element-binding protein 2C
SwissprotQ84ZA13e-73DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA2YY933e-71A2YY93_ORYSI; Putative uncharacterized protein
STRINGLOC_Os08g45110.16e-71(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-28ERF family protein