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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01870.1.g00070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 25726.8 Da PI: 6.503 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 42 | 92 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r +r +lg+f ta eAa+a++aa+++l+g Zpz_sc01870.1.g00070.1.am.mk 42 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALEAARAYDAAARALYG 92 679****999.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.1E-31 | 43 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.824 | 43 | 100 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-13 | 44 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 44 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.65E-17 | 44 | 101 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.9E-29 | 44 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-20 | 44 | 100 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-9 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDEGDFQFRH QSNQKRSRKC CPLRRSRKGC IKGKGGPENQ QCPFRGVRQR TWGKWVAEIR 60 EPNRGARLWL GTFATALEAA RAYDAAARAL YGDCARLNLA AETTPAHTVA AADVRSMTTP 120 CCSADDSANS SVISQVTAVL LPGRHCLMTQ QDAAAAGGTG AGINDSITRT RTAIQQQTDQ 180 LHQLEDDDEG EDFEQFVTRL PKAEDFGLEG FPPDVFDDDA GGIGWPAGMM RVVPRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3gcc_A | 3e-13 | 44 | 99 | 6 | 62 | ATERF1 |
2gcc_A | 3e-13 | 44 | 99 | 6 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU952058 | 9e-83 | EU952058.1 Zea mays clone 1066007 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651102.1 | 2e-71 | PREDICTED: dehydration-responsive element-binding protein 2C | ||||
Swissprot | Q84ZA1 | 3e-73 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A2YY93 | 3e-71 | A2YY93_ORYSI; Putative uncharacterized protein | ||||
STRING | LOC_Os08g45110.1 | 6e-71 | (Oryza sativa Japonica Group) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 1e-28 | ERF family protein |